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DataSets

To show the DataSets (multi-sequence fasta files) please select the specie from the list:


 

They will be listed here.

 

Naming Convention

The datasets have the following naming convention:

Species Code_DataSet Type_Date of construction in YYMMDD format.

(For example: HMAG_EST_070214 what it means: Hydra magnapapillata EST dataset from February 14, 2007.)


Detailed explanation for the Species Code:

Code Species Common name
AIPP Aiptasia pallida Sea anemone
ADIG Acropora digitifera Stony coral
AMIL Acropora millepora Stony coral
APAL Acropora palmata Elkhorn coral
AQUE Amphimedon quennslandica Demosponge
AVIR Anemonia viridis Sea anemone
ACAL Aplysia californica California sea hare
BGLA Biomphalaria glabrata Fresh water snail
BFLO Branchiostoma floridae Florida lancelet
BNER Bugula neritina Arborescent Bryozoan
CHEM Clytia hemisphaerica Hydrozoan
DMAG Daphnia magna Water flea
DPUL Daphnia pulex Water flea
DJAP Dugesia japonica Flatworm
DRYU Dugesia ryukyuensis Flatworm
EMUE Ephydatia muelleri Fresh water sponge
HAMB Haliclona amboinensis Sponge
HTUB Haliclona tubifera Sponge
HMAGsf1 Hydra magnipapillata sf-1 Fresh water polyp
HMAG Hydra magnapapillata Fresh water polyp
HVIR Hydra viridissima Fresh water polyp
HVUL Hydra vulgaris Fresh water polyp
HAEP Hydra vulgaris AEP Fresh water polyp
HECH Hydractinia echinata Colonial hydroid
LCOM Leucosolenia complicata Sponge
LVAN Litopenaeus vannamei Pacific white shrimp
MLIG Macrostomum lignano Flatworm
MSEN Metridium senile Plumose anemone
MLEI Mnemiopsis leidyi Ctenophore
MTEC Molgula tectiformis Tunicate
MBRE Monosiga brevicollis Choanoflagellate
MOVA Monosiga ovata Choanoflagellate
MFAV Montastrea faveolata Stony coral
NVEC Nematostella vectensis Starlet sea anemone
OCAR Oscarella carmela Sponge
Osp. Oscarella sp. Sponge
PMON Penaeus monodon Black tiger shrimp
PMAR Petromyzon marinus Sea lamprey
PPIL Pleurobrachia pileus Ctenophore
PAST Porites astreoides Stony coral
PLOB Porites lobata Lobe coral
SCAR Stylissa carteri Sponge
SPUR Strongylocntrotus purpuratus Sea urchin
SCIL Sycon ciliatum Sponge
TADH Trichoplax adhaerens Placozoan
XTES Xestospongia testudinaria Sponge

Detailed explanation for the DataSet type:

Code

Type

WGS

Whole genome shotgun (raw reads)

WGA

Whole genome assembly (contigs / scaffolds)

EST

Expressed sequence tags (raw reads)

CAP3

Cap3 assembled sequences

T-CDS

Transcript models (contigs) derived from ESTs, RNA-Seq and others

T-PEP

Predicted peptides from transcriptome assemblies

G-CDS

Transcript models predicted from genome assembly

G-PEP

Protein models predicted from genome assembly

 

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